Volume 7, Issue 1
Novel 2D Graphic Representation of Protein Sequence and Its Application

Yongbin Zhao, Xiaohong Li & Zhaohui Qi

Journal of Fiber Bioengineering & Informatics, 7 (2014), pp. 23-33.

Published online: 2014-07

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  • Abstract

In recent years, more and more researchers presented their graphic representations for protein sequence. Here, we present a new 2D graphic representation of protein sequence based on four physicochemical properties of 20 amino acids. By this graphic representation we define a distance calculation formula to quantificationally calculate the similarity degree of different protein sequences. Then we apply the proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317. The results show the proposed method is easy and effective.

  • Keywords

Graphic Representation Protein Sequence Sequence Similarity Sub-cellular Location

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COPYRIGHT: © Global Science Press

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@Article{JFBI-7-23, author = {}, title = {Novel 2D Graphic Representation of Protein Sequence and Its Application}, journal = {Journal of Fiber Bioengineering and Informatics}, year = {2014}, volume = {7}, number = {1}, pages = {23--33}, abstract = {In recent years, more and more researchers presented their graphic representations for protein sequence. Here, we present a new 2D graphic representation of protein sequence based on four physicochemical properties of 20 amino acids. By this graphic representation we define a distance calculation formula to quantificationally calculate the similarity degree of different protein sequences. Then we apply the proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317. The results show the proposed method is easy and effective.}, issn = {2617-8699}, doi = {https://doi.org/10.3993/jfbi03201403}, url = {http://global-sci.org/intro/article_detail/jfbi/4764.html} }
TY - JOUR T1 - Novel 2D Graphic Representation of Protein Sequence and Its Application JO - Journal of Fiber Bioengineering and Informatics VL - 1 SP - 23 EP - 33 PY - 2014 DA - 2014/07 SN - 7 DO - http://doi.org/10.3993/jfbi03201403 UR - https://global-sci.org/intro/article_detail/jfbi/4764.html KW - Graphic Representation KW - Protein Sequence KW - Sequence Similarity KW - Sub-cellular Location AB - In recent years, more and more researchers presented their graphic representations for protein sequence. Here, we present a new 2D graphic representation of protein sequence based on four physicochemical properties of 20 amino acids. By this graphic representation we define a distance calculation formula to quantificationally calculate the similarity degree of different protein sequences. Then we apply the proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317. The results show the proposed method is easy and effective.
Yongbin Zhao, Xiaohong Li & Zhaohui Qi. (2019). Novel 2D Graphic Representation of Protein Sequence and Its Application. Journal of Fiber Bioengineering and Informatics. 7 (1). 23-33. doi:10.3993/jfbi03201403
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