TY - JOUR
T1 - Novel 2D Graphic Representation of Protein Sequence and Its Application
JO - Journal of Fiber Bioengineering and Informatics
VL - 1
SP - 23
EP - 33
PY - 2014
DA - 2014/07
SN - 7
DO - http://doi.org/10.3993/jfbi03201403
UR - https://global-sci.org/intro/article_detail/jfbi/4764.html
KW - Graphic Representation
KW - Protein Sequence
KW - Sequence Similarity
KW - Sub-cellular Location
AB - In recent years, more and more researchers presented their graphic representations for protein sequence.
Here, we present a new 2D graphic representation of protein sequence based on four physicochemical
properties of 20 amino acids. By this graphic representation we define a distance calculation formula
to quantificationally calculate the similarity degree of different protein sequences. Then we apply the
proposed graphical curve and new distance in the similarity/dissimilarity comparison of 10 ND5 proteins
and the protein sub-cellular localization prediction about two common test datasets, ZD98 and CL317.
The results show the proposed method is easy and effective.